Output Message

Welcome to antechamber 20.0: molecular input file processor. Warning: Detected more than 10 Residue sequence numbers; this may be a large multiple residue PDB file; large multiple residue PDB files are not supported. This warning usually indicates a conceptual misunderstanding. We recommend reviewing the Information flow in Amber documentation and the antechamber tutorials. Continuing, but problems may be encountered. Warning: For atom (ID: 10, Name: O) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 17, Name: N) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 20, Name: O) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 27, Name: N) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 30, Name: O) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 34, Name: NE) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 36, Name: NH1) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 37, Name: NH2) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 51, Name: N) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 54, Name: O) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 67, Name: N) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 70, Name: O) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 86, Name: N) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 89, Name: O) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 96, Name: N) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 99, Name: O) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 103, Name: OE1) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 104, Name: OE2) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 111, Name: N) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 114, Name: O) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 121, Name: N) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 124, Name: O) the best APS is not zero. Bonds involving this atom are frozen. Warning: For atom (ID: 127, Name: SD) the best APS is not zero. Bonds involving this atom are frozen. ---Judge bond type for Residue 1 with ID of 12 and Name of MOL --- ---Judge bond type for Residue 2 with ID of 1 and Name of MOL --- Warning: The assigned bond types may be wrong, please : (1) double check the structure (the connectivity) and/or (2) adjust atom valence penalty parameters in APS.DAT, and/or (3) increase PSCUTOFF in define.h and recompile bondtype.c (be cautious, using a large value of PSCUTOFF (>100) will significantly increase the computation time). ---Judge bond type for Residue 3 with ID of 2 and Name of MOL --- ---Judge bond type for Residue 4 with ID of 3 and Name of MOL --- ---Judge bond type for Residue 5 with ID of 4 and Name of MOL --- ---Judge bond type for Residue 6 with ID of 5 and Name of MOL --- ---Judge bond type for Residue 7 with ID of 6 and Name of MOL --- ---Judge bond type for Residue 8 with ID of 7 and Name of MOL --- ---Judge bond type for Residue 9 with ID of 8 and Name of MOL --- ---Judge bond type for Residue 10 with ID of 9 and Name of MOL --- Warning: The assigned bond types may be wrong, please : (1) double check the structure (the connectivity) and/or (2) adjust atom valence penalty parameters in APS.DAT, and/or (3) increase PSCUTOFF in define.h and recompile bondtype.c (be cautious, using a large value of PSCUTOFF (>100) will significantly increase the computation time). ---Judge bond type for Residue 11 with ID of 10 and Name of MOL --- ---Judge bond type for Residue 12 with ID of 11 and Name of MOL ---